DNA/RNA Sequence Manager Tools

Description

Django web application to manage DNA sequences and to visualize a force-directed RNA structures.

This Django web application can only be used locally on your computer.

It allows to manage DNA sequences and store them in a SQLite database

Functionalities

What you can do with this web application are:

About DNA:

• Create, Read, Update and Delete DNA sequences
• DNA reverse sequence.
• DNA reverse-complement sequence.

About RNA:

• RNA secondary structure.
• Interactive 2D forced-directed RNA structure visualization. Zoom, PAN, Lazo or select area are some way examples to interact with the plot.
• Downloadable forced-directed RNA structure plot as image in different formats: PNG, SVG, JPG, JPEG.

Product Content:

Buying this product you'll get a requirements file in '.txt.' format and the Django Sequence Manager web application in a '.zip' file:

• x1 '.zip' file with the entire SequenceManager project.
• x1 '.txt' file as a Python dependencies requirements file.

Quick start:

Follow the next steps:

1. Install the 'requirements.txt' file.
2. Place your command-line prompt inside the main project folder 'SequenceManager', where the 'manage.py' file is and migrate the models to the database by typing: python3 manage.py migrate.
3. Execute the project typing: python3 manage.py runserver.

Needed packages

The next Python packages (included in the requirements file) are needed for the application usage:

• Django
• dash
• dash-bio==1.0.1
• django_plotly_das

Get it now and start developing!

Be careful:

This software is ready to execute and use locally on your computer as a normal Django project that is in development. Tested only on Linux OS.

Make sure you know how to install and run a Django project locally on your computer.