Biopython Tutorial

Biopython Tutorial

Biopython is an open-source python tool mainly used in bioinformatics field. This tutorial walks through the basics of Biopython package, overview of bioinformatics, sequence manipulation and plotting, population genetics, cluster analysis, genome analysis, connecting with BioSQL databases and finally concludes with some examples.

This tutorial is prepared for professionals who are aspiring to make a career in the field of bioinformatics programming using python as programming tool. This tutorial is intended to make you comfortable in getting started with the Biopython concepts and its various functions.

Before proceeding with the various types of concepts given in this tutorial, it is being assumed that the readers are already aware about bioinformatics. In addition to this, it will be very helpful if the readers have a sound knowledge on Python. 

Table of Contents

1- Introduction

2- Installation

3- Creating Simple Application

4- Sequence

5- Advanced Sequence Operations

6- Sequence I/O Operations

7- Sequence Alignments

8- Overview of BLAST

9- Entrez Database

10- PDB Module

11- Motif Objects

12- BioSQL Module

13- Population Genetics

14- Genome Analysis

15- Phenotype Microarray

16- Plotting

17- Cluster Analysis

18- Machine Learning

19- Testing Techniques